---
name: "prokka-clusters_to_hmm"
section: "1"
platform: "linux"
package: "prokka"
version: "1.14.6+dfsg-6"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/prokka-clusters_to_hmm"
---

# prokka-clusters\_to\_hmm(1)

rapid annotation of prokaryotic genomes

## NAME

prokka-clusters\_to\_hmm - rapid annotation of prokaryotic genomes

## SYNOPSIS

**prokka-clusters\_to\_hmm** \[*options*\]

## DESCRIPTION

- **--help**

  This help.

- **--verbose**!

  Verbose output (default '0').

- **--dir**=*s*

  Source CLUSTERS folder (default '/bio/data/CLUSTERS/latest').

- **--lib**=*s*

  Library: PHA PRK ... (default '').

- **--outdir**=*s*

  Output folder for .hmm files and indices (default '.').