---
name: "prokka-cdd_to_hmm"
section: "1"
platform: "linux"
package: "prokka"
version: "1.14.6+dfsg-6"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/prokka-cdd_to_hmm"
---

# prokka-cdd\_to\_hmm(1)

rapid annotation of prokaryotic genomes

## NAME

prokka-cdd\_to\_hmm - rapid annotation of prokaryotic genomes

## SYNOPSIS

**prokka-cdd\_to\_hmm** \[*options*\]  *# will write LIB.aln and LIB.hmm*

## DESCRIPTION

- **--help**

  This help.

- **--verbose**!

  Verbose output (default '0').

- **--srcdir**=*s*

  CDD download dir (default '/bio/data/cdd/latest/').

- **--lib**=*s*

  Subset of CDD to create (default 'COG').

- **--force**!

  Force overwrite of output files: LIB.aln LIB.hmm (default '0').