prokka-biocyc_to_fasta_db1
Rapid annotation of prokaryotic genomes
Usage
prokka-biocyc_to_fasta_db [options]
[--datadir
biocyc_data_subdir]
>
proteins.faa
Overview
-
--help -
This help.
--verbose!-
Verbose progress (default '0').
-
--datadir=s -
Path to data/ folder in BioCyc organism directory (default '').
-
--sep=s -
Separator between EC/gene/product (default '~~~').
-
--blank=s -
Replace empty EC/gene/product with this (default '').
--pseudo!-
Include /pseudo genes (default '0').
--hypo!-
Include 'hypothetical protein' genes (default '0').
-
--minlen=i -
Minimum peptide length (default '0').