---
name: "prokka-biocyc_to_fasta_db"
section: "1"
platform: "linux"
package: "prokka"
version: "1.14.6+dfsg-6"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/prokka-biocyc_to_fasta_db"
---

# prokka-biocyc\_to\_fasta\_db(1)

rapid annotation of prokaryotic genomes

## NAME

prokka-biocyc\_to\_fasta\_db - rapid annotation of prokaryotic genomes

## SYNOPSIS

**prokka-biocyc\_to\_fasta\_db** \[*options*\] \[*--datadir biocyc\_data\_subdir*\] *\> proteins.faa*

## DESCRIPTION

- **--help**

  This help.

- **--verbose**!

  Verbose progress (default '0').

- **--datadir**=*s*

  Path to data/ folder in BioCyc organism directory (default '').

- **--sep**=*s*

  Separator between EC/gene/product (default '~~~').

- **--blank**=*s*

  Replace empty EC/gene/product with this (default '').

- **--pseudo**!

  Include */pseudo* genes (default '0').

- **--hypo**!

  Include 'hypothetical protein' genes (default '0').

- **--minlen**=*i*

  Minimum peptide length (default '0').