NAME
prokka-biocyc_to_fasta_db - rapid annotation of prokaryotic genomes
SYNOPSIS
prokka-biocyc_to_fasta_db [options] [--datadir biocyc_data_subdir] > proteins.faa
DESCRIPTION
- --help
-
This help.
- --verbose!
-
Verbose progress (default '0').
- --datadir=s
-
Path to data/ folder in BioCyc organism directory (default '').
- --sep=s
-
Separator between EC/gene/product (default '~~~').
- --blank=s
-
Replace empty EC/gene/product with this (default '').
- --pseudo!
-
Include /pseudo genes (default '0').
- --hypo!
-
Include 'hypothetical protein' genes (default '0').
- --minlen=i
-
Minimum peptide length (default '0').