---
name: "prody"
section: "1"
platform: "linux"
package: "python3-prody"
version: "2.3.1+dfsg-3+deb12u2"
release: "Debian 12 (Bookworm)"
platforms: ["linux"]
url: "https://new.carta.tech/prody"
---

# prody(1)

Python Package for Protein Dynamics Analysis

## NAME

ProDy - Python Package for Protein Dynamics Analysis

## DESCRIPTION

usage: prody \[-h\] \[-c\] \[-v\]

-

  {anm,gnm,pca,eda,align,blast,biomol,catdcd,contacts,fetch,select,energy} ...

ProDy: A Python Package for Protein Dynamics Analysis

### options:

- **-h**, **--help**

  show this help message and exit

- **-c**, **--cite**

  print citation info and exit

- **-v**, **--version**

  print ProDy version and exit

### subcommands:

-

  {anm,gnm,pca,eda,align,blast,biomol,catdcd,contacts,fetch,select,energy}

- anm

  perform anisotropic network model calculations

- gnm

  perform Gaussian network model calculations

- pca

  perform principal component analysis calculations

- eda

  perform essential dynamics analysis calculations

- align

  align models or structures

- blast

  blast search Protein Data Bank

- biomol

  build biomolecules

- catdcd

  concatenate dcd files

- contacts

  identify contacts between a target and ligand(s)

- fetch

  fetch a PDB file

- select

  select atoms and write a PDB file

- energy

  fix missing atoms, solvate and write a file containing energy

See 'prody \<command\> **-h**' for more information on a specific command.