prody1
Python package for protein dynamics analysis
Overview
usage: prody [-h] [-c] [-v]
-
{anm,gnm,pca,eda,align,blast,biomol,catdcd,contacts,fetch,select,energy} ...
ProDy: A Python Package for Protein Dynamics Analysis
options:
-
-h, --help -
show this help message and exit
-
-c, --cite -
print citation info and exit
-
-v, --version -
print ProDy version and exit
subcommands:
|
{anm,gnm,pca,eda,align,blast,biomol,catdcd,contacts,fetch,select,energy} |
|
anm
|
perform anisotropic network model calculations |
gnm
|
perform Gaussian network model calculations |
pca
|
perform principal component analysis calculations |
eda
|
perform essential dynamics analysis calculations |
align
|
align models or structures |
blast
|
blast search Protein Data Bank |
biomol
|
build biomolecules |
catdcd
|
concatenate dcd files |
contacts
|
identify contacts between a target and ligand(s) |
fetch
|
fetch a PDB file |
select
|
select atoms and write a PDB file |
energy
|
fix missing atoms, solvate and write a file containing energy |
See 'prody <command> -h' for more information on a specific command.