NAME
ProDy - Python Package for Protein Dynamics Analysis
DESCRIPTION
usage: prody [-h] [-c] [-v]
-
{anm,gnm,pca,eda,align,blast,biomol,catdcd,contacts,fetch,select,energy} ...
ProDy: A Python Package for Protein Dynamics Analysis
options:
- -h, --help
-
show this help message and exit
- -c, --cite
-
print citation info and exit
- -v, --version
-
print ProDy version and exit
subcommands:
-
{anm,gnm,pca,eda,align,blast,biomol,catdcd,contacts,fetch,select,energy}
- anm
-
perform anisotropic network model calculations
- gnm
-
perform Gaussian network model calculations
- pca
-
perform principal component analysis calculations
- eda
-
perform essential dynamics analysis calculations
- align
-
align models or structures
- blast
-
blast search Protein Data Bank
- biomol
-
build biomolecules
- catdcd
-
concatenate dcd files
- contacts
-
identify contacts between a target and ligand(s)
- fetch
-
fetch a PDB file
- select
-
select atoms and write a PDB file
- energy
-
fix missing atoms, solvate and write a file containing energy
See 'prody <command> -h' for more information on a specific command.