prinseq-lite(1) on Linux
The text 266066e69b8e, as Debian 13 (Trixie), Debian 12 (Bookworm), Debian 11 (Bullseye) shipped it. The page shows this text now.
PReprocessing and INformation of SEQuence data
Flags it lists
-
-aa -
-custom_params -
-derep -
-derep_min -
-dna_rna -
-exact_only -
-fasta -
-fasta2 -
-fastq -
-fastq2 -
-graph_data -
-graph_stats -
-h -
-help -
-lc_method -
-lc_threshold -
-line_width -
-log -
-man -
-max_gc -
-max_len -
-max_qual_mean -
-max_qual_score -
-min_gc -
-min_len -
-min_qual_mean -
-min_qual_score -
-no_qual_header -
-noniupac -
-ns_max_n -
-ns_max_p -
-out_bad -
-out_format -
-out_good -
-params -
-phred64 -
-qual -
-qual_noscale -
-range_gc -
-range_len -
-rm_header -
-seq_case -
-seq_id -
-seq_id_mappings -
-seq_num -
-si13 -
-stats_all -
-stats_assembly -
-stats_dinuc -
-stats_dupl -
-stats_info -
-stats_len -
-stats_ns -
-stats_tag -
-trim_left -
-trim_left_p -
-trim_ns_left -
-trim_ns_right -
-trim_qual_left -
-trim_qual_right -
-trim_qual_rule -
-trim_qual_step -
-trim_qual_type -
-trim_qual_window -
-trim_right -
-trim_right_p -
-trim_tail_left -
-trim_tail_right -
-trim_to_len -
-verbose -
-version