prinseq-graphs-noPCA.pl(1)

Usage

perl prinseq-graphs.pl [-h] [-help] [-version] [-man] [-verbose] [-i input_graph_data_file] [-png_all] [-html_all] [-log file]

Version

PRINSEQ-graphs 0.6

Overview

PRINSEQ will help you to preprocess your genomic or metagenomic sequence data in FASTA (and QUAL) or FASTQ format. The graphs version allows users of the lite version to generate graphs similar to the web version.

Options

-help | -h: Print the help message; ignore other arguments.

-man: Print the full documentation; ignore other arguments.

-version: Print program version; ignore other arguments.

-verbose: Prints status and info messages during processing.

***** INPUT OPTIONS *****

-i <file>: Input file containing the graph data generated by the lite version.

***** OUTPUT OPTIONS *****

-o <string>: By default, the output files are created in the same directory as the input file with an additional "_prinseq_graphs_XXXX" in their name (where XXXX is replaced by random characters to prevent overwriting previous files). To change the output filename and location, specify the filename using this option. The file extension will be added automatically.

-png_all: Use this option to generate PNG files with the graphs.

-html_all: Use this option to generate a HTML file with the graphs and tables.

-log <file>: Log file to keep track of parameters, errors, etc. The log file name is optional. If no file name is given, the log file name will be "inputname.log". If the log file already exists, new content will be added to the file.

Releases

Unchanged in 3 releases since Debian 11 (Bullseye).

11–13