pp_simScore(1) on Linux
The text 0e1daf0d9755, as Debian 12 (Bookworm) shipped it.
print similarity and alignments for block-profile and protein sequence on the standard output
Flags it lists
-
--alignment -
--epsilon_intron -
--epsilon_noIntron -
--fasta -
--gap_inter -
--gap_intra -
--gap_intron -
--help -
--intron_weight_inter -
--intron_weight_intra -
--out -
-a -
-b -
-e -
-f -
-g -
-h -
-i -
-n -
-o -
-r -
-t