---
name: "polish_clusters"
section: "1"
platform: "linux"
package: "pinfish"
version: "0.1.0+ds-4+b8"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/polish_clusters"
---

# polish\_clusters(1)

Collection of tools to annotate genomes using long read transcriptomics data

## NAME

polish\_clusters - Collection of tools to annotate genomes using long read transcriptomics data

## DESCRIPTION

### Usage of polish\_clusters:

- **-V**

  Print out version.

**-a** string

-

  Read cluster memberships in tabular format.

**-c** int

-

  Minimum cluster size. (default 1)

**-d** string

-

  Location of temporary directory.

- **-h**

  Print out help message.

- **-m**

  Do not load all reads in memory (slower).

**-o** string

-

  Output fasta file.

**-t** int

-

  Number of cores to use. (default 4)

**-x** string

-

  Arguments passed to minimap2.

**-y** string

-

  Arguments passed to racon.

## AUTHOR

 This manpage was written by Nilesh Patra for the Debian distribution and\
  can be used for any other usage of the program.