pmrna1
Filter out all but the primary isoform from each gene of the input
Usage
pmrna [options]
<
annot.gff3
>
new.gff3
Overview
Options:
-h|--help-
print this help message and exit
-i|--introns-
flag indicating that introns are declared explicitly and do not need to be inferred from exon features; default is to infer introns
-l|--locus-
report a single representative mRNA for each locus instead of each gene
-m|--map: FILE-
write each gene/mRNA mapping to the specified file
-p|--pseudogenes-
disable pseudogene detection and correction