plot_res1

Determine features of organisms, clades, taxonomic units, genes

Usage

plot_res [-h] [--feature_font_size FEATURE_FONT_SIZE] [--format png,svg,pdf] [--dpi DPI] [--title TITLE] [--title_font_size TITLE_FONT_SIZE] [--class_legend_font_size CLASS_LEGEND_FONT_SIZE] [--width WIDTH] [--height HEIGHT] [--left_space LS] [--right_space RS] [--orientation h,v] [--autoscale 0,1] [--background_color k,w] [--subclades N_SCL] [--max_feature_len MAX_FEATURE_LEN] [--all_feats ALL_FEATS] [--otu_only] [--report_features] INPUT_FILE OUTPUT_FILE

Overview

Plot results

Options

positional arguments:

INPUT_FILE: tab delimited input file

OUTPUT_FILE: the file for the output image

optional arguments:

-h, --help: show this help message and exit

--feature_font_size FEATURE_FONT_SIZE: the file for the output image

--format {png,svg,pdf}: the format for the output file

--dpi DPI

--title TITLE

--title_font_size TITLE_FONT_SIZE

--class_legend_font_size CLASS_LEGEND_FONT_SIZE

--width WIDTH

--height HEIGHT: only for vertical histograms

--left_space LS

--right_space RS

--orientation {h,v}

--autoscale {0,1}

--background_color {k,w}: set the color of the background

--subclades N_SCL: number of label levels to be displayed (starting from the leaves, -1 means all the levels, 1 is default )

--max_feature_len MAX_FEATURE_LEN: Maximum length of feature strings (def 60)

--all_feats ALL_FEATS

--otu_only: Plot only species resolved OTUs (as opposed to all levels)

--report_features: Report important features to STDOUT