---
name: "plot_cladogram"
section: "1"
platform: "linux"
package: "lefse"
version: "1.0.8-3"
release: "Debian 11 (Bullseye)"
platforms: ["linux"]
url: "https://new.carta.tech/plot_cladogram"
---

# plot\_cladogram(1)

determine features of organisms, clades, taxonomic units, genes

## NAME

plot\_cladogram - determine features of organisms, clades, taxonomic units, genes

## SYNOPSIS

**plot\_cladogram** \[-h\] \[--clade\_sep CLADE\_SEP\] \[--max\_lev MAX\_LEV\] \[--max\_point\_size MAX\_POINT\_SIZE\] \[--min\_point\_size MIN\_POINT\_SIZE\] \[--point\_edge\_width MARKEREDGEWIDTH\] \[--siblings\_connector\_width SIBLINGS\_CONNECTOR\_WIDTH\] \[--parents\_connector\_width PARENTS\_CONNECTOR\_WIDTH\] \[--radial\_start\_lev RADIAL\_START\_LEV\] \[--labeled\_start\_lev LABELED\_START\_LEV\] \[--labeled\_stop\_lev LABELED\_STOP\_LEV\] \[--abrv\_start\_lev ABRV\_START\_LEV\] \[--abrv\_stop\_lev ABRV\_STOP\_LEV\] \[--expand\_void\_lev EXPAND\_VOID\_LEV\] \[--class\_legend\_vis CLASS\_LEGEND\_VIS\] \[--colored\_connector COLORED\_CONNECTORS\] \[--alpha ALPHA\] \[--title TITLE\] \[--sub\_clade SUB\_CLADE\] \[--title\_font\_size TITLE\_FONT\_SIZE\] \[--right\_space\_prop R\_PROP\] \[--left\_space\_prop L\_PROP\] \[--label\_font\_size LABEL\_FONT\_SIZE\] \[--background\_color {k,w}\] \[--colored\_labels {0,1}\] \[--class\_legend\_font\_size CLASS\_LEGEND\_FONT\_SIZE\] \[--dpi DPI\] \[--format {png,svg,pdf}\] \[--all\_feats ALL\_FEATS\] INPUT\_FILE OUTPUT\_FILE

## DESCRIPTION

Cladoplot

## OPTIONS

### positional arguments:

- INPUT\_FILE

  tab delimited input file

- OUTPUT\_FILE

  the file for the output image

### optional arguments:

- **-h**, **--help**

  show this help message and exit

**--clade\_sep** CLADE\_SEP

**--max\_lev** MAX\_LEV

**--max\_point\_size** MAX\_POINT\_SIZE

**--min\_point\_size** MIN\_POINT\_SIZE

**--point\_edge\_width** MARKEREDGEWIDTH

**--siblings\_connector\_width** SIBLINGS\_CONNECTOR\_WIDTH

**--parents\_connector\_width** PARENTS\_CONNECTOR\_WIDTH

**--radial\_start\_lev** RADIAL\_START\_LEV

**--labeled\_start\_lev** LABELED\_START\_LEV

**--labeled\_stop\_lev** LABELED\_STOP\_LEV

**--abrv\_start\_lev** ABRV\_START\_LEV

**--abrv\_stop\_lev** ABRV\_STOP\_LEV

**--expand\_void\_lev** EXPAND\_VOID\_LEV

**--class\_legend\_vis** CLASS\_LEGEND\_VIS

**--colored\_connector** COLORED\_CONNECTORS

**--alpha** ALPHA

**--title** TITLE

**--sub\_clade** SUB\_CLADE

**--title\_font\_size** TITLE\_FONT\_SIZE

**--right\_space\_prop** R\_PROP

**--left\_space\_prop** L\_PROP

**--label\_font\_size** LABEL\_FONT\_SIZE

- **--background\_color** {k,w}

  set the color of the background

- **--colored\_labels** {0,1}

  draw the label with class color (1) or in black (0)

**--class\_legend\_font\_size** CLASS\_LEGEND\_FONT\_SIZE

**--dpi** DPI

- **--format** {png,svg,pdf}

  the format for the output file

**--all\_feats** ALL\_FEATS

## AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.