NAME
pkfilterascii - program to filter data in an ASCII file
SYNOPSIS
FCpkfilterasciiF[0] FC-iF[0] input [FC-icF[0] column] [options] [advanced options]
DESCRIPTION
pkfilterascii filters the columns defined by the option FC-icF[0]. A varietey of filters can be selected from with the option FC-fF[0]. The kernel size is defined with the option FC-dzF[0]. Alternatively, you can define your own filter tap values (use the option FC-tapzF[0] for each tap). In case of spectral filtering, define the full width half max values (FC-fwhmF[0] value) or spectral response functions in ASCII files (FC-srfF[0] filename).
OPTIONS
- FC-iF[0] filename, FC--inputF[0] filename
-
input ASCII file
- FC-oF[0] filename, FC--outputF[0] filename
-
Output ASCII file
- FC-icF[0] column, FC--inputColsF[0] column
-
input columns (e.g., for three dimensional input data in first three columns use: FC-icF[0] 0 FC-icF[0] 1 FC-icF[0] 2)
- FC-fF[0] filter, FC--filterF[0] filter
-
filter function (to be implemented: dwt, dwti,dwt_cut)
- FC-dzF[0] value, FC--dzF[0] value
-
filter kernel size in z (band or spectral dimension), must be odd (example: 3). Set dz>0 if 1-D filter must be used in band domain
- FC-tF[0], FC--transposeF[0]
-
transpose output with samples in rows and wavelengths in cols
- FC-vF[0] level, FC--verboseF[0] level
-
verbose
Advanced options
- FC-tapzF[0] value, FC--tapzF[0] value
-
taps used for spectral filtering
- FC-fwhmF[0] value, FC--fwhmF[0] value
-
list of full width half to apply spectral filtering (FC-fwhmF[0] band1 FC-fwhmF[0] band2 ...)
- FC-srfF[0] filename, FC--srfF[0] filename
-
list of ASCII files containing spectral response functions (two columns: wavelength response)
- FC-winF[0] col, FC--wavelengthInF[0] col
-
column number of input ASCII file containing wavelengths
- FC-woutF[0] value, FC--wavelengthOutF[0] value
-
list of wavelengths in output spectrum (FC-woutF[0] band1 FC-woutF[0] band2 ...)
- FC-interpF[0] type, FC--interpF[0] type
-
type of interpolation for spectral filtering (see http://www.gnu.org/software/gsl/manual/html_node/Interpolation-Types.html)
- FC-wtF[0] type, FC--waveletF[0] type
-
wavelet type: daubechies,daubechies_centered, haar, haar_centered, bspline, bspline_centered
- FC-wfF[0] family, FC--wfF[0] family
-
wavelet family (vanishing moment, see also http://www.gnu.org/software/gsl/manual/html_node/DWT-Initialization.html)
- FC-cutF[0] threshold, FC--cutF[0] threshold
-
threshold to cut dwt coefficients. Use 0 to keep all.