---
name: "pizzly"
section: "1"
platform: "linux"
package: "pizzly"
version: "0.37.3+ds-9"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/pizzly"
---

# pizzly(1)

pizzly

## NAME

pizzly - pizzly

## DESCRIPTION

pizzly ======

SYNOPSIS

DESCRIPTION

REQUIRED ARGUMENTS

-

  FUSION STRING

OPTIONS

**-h**, **--help**

-

  Display the help message.

**--version-check** BOOL

-

  Turn this option off to disable version update notifications of the application. One of 1, ON, TRUE, T, YES, 0, OFF, FALSE, F, and NO. Default: 1.

**-k** INTEGER

-

  k-mer size used in kallisto

**-a**, **--align-score** INTEGER

-

  Maximum number of mismatches allowed (default: 2)

**-i**, **--insert-size** INTEGER

-

  Maximum fragment size of library (default: 400)

**-o**, **--output** STRING

-

  Prefix for output files

**-G**, **--gtf** STRING

-

  Annotation in GTF format

**-C**, **--cache** STRING

-

  File for caching annotation (created if not present, otherwise reused from previous runs)

**-F**, **--fasta** STRING

-

  Fasta reference

**--ignore-protein**

-

  Ignore any protein coding information in annotation

**--version**

-

  Display version information.

VERSION

-

  Last update: pizzly version: 0.37.3 SeqAn version: 2.4.0

SeqAn version: 2.4.0