NAME
pizzly - pizzly
DESCRIPTION
pizzly ======
SYNOPSIS
DESCRIPTION
REQUIRED ARGUMENTS
-
FUSION STRING
OPTIONS
-h, --help
-
Display the help message.
--version-check BOOL
-
Turn this option off to disable version update notifications of the application. One of 1, ON, TRUE, T, YES, 0, OFF, FALSE, F, and NO. Default: 1.
-k INTEGER
-
k-mer size used in kallisto
-a, --align-score INTEGER
-
Maximum number of mismatches allowed (default: 2)
-i, --insert-size INTEGER
-
Maximum fragment size of library (default: 400)
-o, --output STRING
-
Prefix for output files
-G, --gtf STRING
-
Annotation in GTF format
-C, --cache STRING
-
File for caching annotation (created if not present, otherwise reused from previous runs)
-F, --fasta STRING
-
Fasta reference
--ignore-protein
-
Ignore any protein coding information in annotation
--version
-
Display version information.
VERSION
-
Last update: pizzly version: 0.37.3 SeqAn version: 2.4.0
SeqAn version: 2.4.0