NAME
picopore-rename - renaming groups and datasets within Oxford Nanopore Technologies FAST5 files
SYNOPSIS
[-h] -p PATTERN -r REPLACEMENT [-v] [-y] [-t INT] [--prefix STR] [--skip-root] [--print-every INT] [input [input ...]]
DESCRIPTION
A tool for renaming groups and datasets within Oxford Nanopore Technologies FAST5 files
OPTIONS
positional arguments:
- input
-
list of directories or fast5 files to shrink
optional arguments:
- -h, --help
-
show this help message and exit
- -p PATTERN, --pattern PATTERN
-
String or regex to replace
- -r REPLACEMENT, --replacement REPLACEMENT
-
String or regex replacement for PATTERN
- -v, --version
-
show version number and exit
- -y
-
skip confirm step
- -t INT, --threads INT
-
number of threads (Default: 1)
- --prefix STR
-
add prefix to output files to prevent overwrite
- --skip-root, --no-skip-root
-
ignore files in root input directories for albacore realtime compression (Default: --no-skip-root)
- --print-every INT
-
print a dot every approximately INT files, or -1 to silence (Default: 100)
AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and
can be used for any other usage of the program.