phipack-profile1
Phi test and other tests of recombination
Usage
Phi [{-f | -s | -r}]
Filename
[-t]
AlignmentType
Overview
Input file not specified!!! (use -f|-r|-s)
-
[-w #] [-k #] [- v] [-n #] [-m #]
Options
-f: Filename = FASTA format
-s: Filename = Strict phylip file
-r: Filename = Relaxed phylip file
-t: AlignmentType = D|A|O where D=DNA-
A=AA and O=OTHER [default DNA]
-w: # = Change default window size for PHI [default w = 100]
-v: Verbose [default = FALSE]
-n: # = Change scanning size for regions to test [default n = 1000]
-m: # = Step size for profile method [default m = 25]
Releases
Unchanged in 3 releases since Debian 11 (Bullseye).