NAME
phast - phylogenetic analysis with space/time models
DESCRIPTION
The PHAST package contains the following programs:
- all_dists
-
hmm_view phastBias
- base_evolve
-
indelFit phastCons
- chooseLines
-
indelHistory phastMotif
- clean_genes
-
maf_parse phastOdds
- consEntropy
-
makeHKY phyloBoot
- convert_coords
-
modFreqs phyloFit
- display_rate_matrix
-
msa_diff phyloP
- dless
-
msa_split prequel
- dlessP
-
msa_view refeature
- draw_tree
-
pbsDecode stringiphy
- eval_predictions
-
pbsEncode test
- exoniphy
-
pbsScoreMatrix tree_doctor
- hmm_train
-
pbsTrain treeGen
- hmm_tweak
-
phast
-
For help, type the program's name followed by -h in your command line window.