permuteSmooth1

Usage

Overview

permuteSmooth is a method for adding empirical p-values smoothed wcFst scores.

Options

Required:
      file:     f   -- argument: original wcFst data     
      smoothed: s   -- argument: smoothed wcFst data     
      format:   y   -- argument: [swcFst, segwcFst]      
Optional:
      number:   n   -- argument: the number of permutations to run for each value [1000]
      success:  u   -- argument: stop permutations after 's' successes [1]
      success:  x   -- argument: number of threads [1]
OUTPUT: **permuteSmooth** will append three additional columns:
        1. The number of successes                            
        2. The number of trials                               
        3. The empirical p-value                              
Type: statistics

Exit status

0

Success

not 0

Failure

Other