permuteGPAT++1

Usage

Overview

permuteGPAT++ is a method for adding empirical p-values to a GPAT++ score.

Options

     Currently **permuteGPAT++** only supports wcFst, but will be extended.    
OUTPUT: **permuteGPAT++** will append three additional columns:
        1. The number of successes                         
        2. The number of trials                            
        3. The empirical p-value                           
file:    f   -- argument: the input file     
number:  n   -- argument: the number of permutations to run for each value [1000]
success: s   -- argument: stop permutations after 's' successes [1]
Type: phenotype

Exit status

0

Success

not 0

Failure

Other