---
name: "percentid"
section: "1"
platform: "linux"
package: "fsa"
version: "1.15.9+dfsg-6"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/percentid"
---

# percentid(1)

Calculate the percentage identity of the passed alignment

## NAME

percentid - Calculate the percentage identity of the passed alignment

## SYNOPSIS

**percentid** *\<multi-FASTA or Stockholm alignment\>*

## DESCRIPTION

percentid from FSA 1.15.9

Calculate the percentage identity of the passed alignment.

Input protein alignment must be in multi-FASTA or Stockholm format.

## AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.