---
name: "pepwindowall"
section: "1e"
platform: "linux"
package: "emboss"
version: "6.6.0+dfsg-15"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/pepwindowall"
---

# pepwindowall(1e)

Draw Kyte-Doolittle hydropathy plot for a protein alignment

## NAME

pepwindowall - Draw Kyte-Doolittle hydropathy plot for a protein alignment

## SYNOPSIS

**pepwindowall** **-sequences** *seqset* \[**-datafile** *datafile*\] \[**-length** *integer*\] \[**-normalize** *boolean*\] **-graph** *xygraph*

**pepwindowall** **-help**

## DESCRIPTION

**pepwindowall** is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Protein:Properties" command group(s).

## OPTIONS

### Input section

- **-sequences** *seqset*

  File containing a sequence alignment

- **-datafile** *datafile*

  Default value: Enakai.dat

### Additional section

- **-length** *integer*

  Default value: 19

- **-normalize** *boolean*

  Default value: N

### Output section

- **-graph** *xygraph*

  ## BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group\_id=93650&atid=605031).

## SEE ALSO

pepwindowall is fully documented via the **tfm**(1) system.

## AUTHOR

**Debian Med Packaging Team** \<debian-med-packaging@lists.alioth.debian.org\>

Wrote the script used to autogenerate this manual page.

## COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.