pbalign(1) on Linux
The text a12444629bad, as Debian 9 (Stretch) shipped it.
Mapping PacBio sequences to references
Flags it lists
-
--algorithm -
--algorithmOptions -
--concordant -
--configFile -
--debug -
--filterAdapterOnly -
--help -
--hitPolicy -
--log-file -
--log-level -
--maxDivergence -
--maxHits -
--maxMatch -
--minAccuracy -
--minAnchorSize -
--minLength -
--noSplitSubreads -
--nproc -
--pdb -
--profile -
--pulseFile -
--quiet -
--regionTable -
--scoreCutoff -
--seed -
--tmpDir -
--unaligned -
--useccs -
--verbose -
--version -
-h -
-v