pauvre1
Qc and genome browser plotting oxford nanopore and pacbio long reads
Overview
usage: pauvre [-h] [-v]
-
{browser,custommargin,marginplot,redwood,stats,synplot} ...
optional arguments:
-
-h, --help -
show this help message and exit
-
-v, --version -
Installed pauvre version
[sub-commands]:
-
{browser,custommargin,marginplot,redwood,stats,synplot}
- browser
-
an adaptable genome browser with various track types
- custommargin
-
plot custom marginal histograms of tab-delimited files
- marginplot
-
plot a marginal histogram of a fastq file
- redwood
-
make a redwood plot from a bam file
- stats
-
outputs stats from a fastq file
- synplot
-
make a synteny plot from a gff file, protein alignment, and partition file