---
name: "patmatmotifs"
section: "1e"
platform: "linux"
package: "emboss"
version: "6.6.0+dfsg-15"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/patmatmotifs"
---

# patmatmotifs(1e)

Scan a protein sequence with motifs from the PROSITE database

## NAME

patmatmotifs - Scan a protein sequence with motifs from the PROSITE database

## SYNOPSIS

**patmatmotifs** **-sequence** *sequence* \[**-full** *boolean*\] \[**-prune** *boolean*\] **-outfile** *report*

**patmatmotifs** **-help**

## DESCRIPTION

**patmatmotifs** is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Protein:Motifs" command group(s).

## OPTIONS

### Input section

- **-sequence** *sequence*

  ### Additional section

- **-full** *boolean*

  Default value: N

- **-prune** *boolean*

  Ignore simple patterns. If this is true then these simple post-translational modification sites are not reported: myristyl, asn\_glycosylation, camp\_phospho\_site, pkc\_phospho\_site, ck2\_phospho\_site, and tyr\_phospho\_site. Default value: Y

### Output section

- **-outfile** *report*

  ## BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group\_id=93650&atid=605031).

## SEE ALSO

patmatmotifs is fully documented via the **tfm**(1) system.

## AUTHOR

**Debian Med Packaging Team** \<debian-med-packaging@lists.alioth.debian.org\>

Wrote the script used to autogenerate this manual page.

## COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.