---
name: "partit2bed.pl"
section: "1"
platform: "linux"
package: "chip-seq"
version: "1.5.5-3"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/partit2bed.pl"
---

# partit2bed.pl(1)

converts the output of the ChIP-Seq partitioning program to BED format

## NAME

partit2bed.pl - converts the output of the ChIP-Seq partitioning program to BED format

## DESCRIPTION

-

  partit2bed.pl \[options\] \<ChIP-Part out file\>

-

  where options are:

- **-h**\|--help

  Show this stuff

- **--db** \<path\>

  Use \<path\> to locate Chrom Id Storable File 'chro\_idx.nstorage'

- **-t**\|--track \<track\>

  BED track name \[def: Test-BED\]

- **-d**\|--desc \<desc\>

  Description field of the BED header line \[def: ChIP-Seq\]

- **-n** \<int\>

  Chromosome number (BED declaration lines) \[def: 0 - all chromosomes\]

- **-b** \<int\>

  Chromosome start \[def: **-1** - entire chrom region\]

- **-e** \<int\>

  Chromosome end \[def: **-1** - entire chrom region\]

-

  The program converts the output of the ChIP-Seq partitioning program to BED format.

## AUTHOR

 This manpage was written by Andreas Tille for the Debian distribution and\
  can be used for any other usage of the program.