---
name: "parse-examl"
section: "1"
platform: "linux"
package: "examl"
version: "3.0.22-6+b3"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/parse-examl"
---

# parse-examl(1)

transform an alignment file in relaxed phylip format into a binary file format that can be read by ExaML

## NAME

parse-examl - transform an alignment file in relaxed phylip format into a binary file format that can be read by ExaML

## SYNOPSIS

**parse-examl** **-s** sequenceFileName **-n** outputFileName **-m** substitutionModel \[-c\] \[-q\] \[-h\]

## OPTIONS

- **-m** Model of

  Nucleotide or Amino Acid Substitution:

-

  For Binary data use: BIN For DNA data use:    DNA For AA data use:     PROT

- **-c**

  disable site pattern compression

- **-q**

  Specify the file name which contains the assignment of models to alignment partitions for multiple models of substitution. For the syntax of this file please consult the manual.

- **-h**

  Display this help message.

## AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.