NAME
optimir - Integrating genetic variations in miRNA alignment
SYNOPSIS
optimir [options]
DESCRIPTION
OptimiR is a miRSeq data alignment workflow. It integrates genetic information to assess the impact of variants on miRNA expression. OptimiR: A bioinformatics pipeline designed to detect and quantify miRNAs, isomiRs and polymiRs from miRSeq data, and study the impact of genetic variations on polymiRs' expression.
OPTIONS
Basic options
- -h, --help
-
Produce help message
Subcommands
- process
-
Process a single fastq file with the OptimiR workflow
- summarize
-
Summarize results of previously processed samples
- libprep
-
Only prepare small RNA alignment library sequences that integrates genetic variants (required before processing multiple samples in parallel)
SEE ALSO
https://github.com/FlorianThibord/OptimiR
AUTHOR
OptimiR was written by Florian Thibord.