NAME
nthll - Streaming algorithm to estimate cardinality in genomics datasets
SYNOPSIS
nthll [OPTION]... FILE(S)...
DESCRIPTION
Estimates distinct number of k-mers in FILE(S).
Acceptable file formats: fastq, fasta, sam, bam and in compressed formats gz, bz, zip, xz. Accepts a list of files by adding @ at the beginning of the list name.
-
Options:
- -t, --threads=N
-
use N parallel threads [1] (N>=2 should be used when input files are >=2)
- -k, --kmer=N
-
the length of kmer [64]
- --help
-
display this help and exit
--version output version information and exit
REPORTING BUGS
Report bugs to https://github.com/bcgsc/ntCard/issues
AUTHOR
This manpage was written by Nilesh Patra for the Debian distribution and
can be used for any other usage of the program.