NAME
nthash - Recursive hash function for hashing all possible k-mers in a DNA/RNA sequence
SYNOPSIS
ntHash -k VAR -o VAR [-f VAR] [-h] [-s VAR] [--long] [--binary] [--verbose] files
DESCRIPTION
Unknown argument: --help
Positional arguments:
- files
-
Input sequence files [nargs: 0 or more] [required]
Optional arguments:
-v, --version prints version information and exits
- -k
-
k-mer size [required]
- -o
-
Output file (for -f collect) or directory path [required]
- -f
-
Output file organization (store hashes for each 'file', 'record', or 'collect' all hashes into a single file [default: "file"]
- -h
-
Number of hashes per k-mer/seed [default: 1]
- -s
-
Input spaced seed patterns separated by commas (e.g. 1110111,11011011). Performs k-mer hashing if no value provided.
- --long
-
Optimize file reader for long sequences (>5kbp)
- --binary
-
Output hashes in binary files (otherwise plain text)
- --verbose
-
Print progress to stdout
AUTHOR
This manpage was written by Nilesh Patra for the Debian distribution and
can be used for any other usage of the program.