NAME
nps2gps - convert nucleotide-protein sets to ASN.1 genomic product sets
SYNOPSIS
nps2gps [-] [-B] [-D] [-F] [-G str] [-L] [-N] [-P] [-Q] [-R] [-S] [-T] [-U] [-f str] [-i filename] [-o filename] [-p path] [-r path] [-x str]
DESCRIPTION
nps2gps converts NCBI Bioseq-sets from simple nucleotide-protein sets to full genomic product sets complete with mRNA transcripts, which it outputs as text ASN.1.
OPTIONS
A summary of options is included below.
- -
-
Print usage message
- -B
-
NG and NR rRNA
- -D
-
RefSeq mRNA Titles
- -F
-
Map by Feature ID
- -G str
-
General ID database name
- -L
-
Lock components in advance
- -N
-
Promote Non-coding RNAs
- -P
-
mRNA ID from Protein
- -Q
-
Special mRNA titles
- -R
-
Enable Remote fetching from ID
- -S
-
Special ncRNA on preRNA
- -T
-
Map by Transcript ID
- -U
-
Remove Unnecessary gene cross-references
- -f str
-
Substring filter
- -i filename
-
Single input file (default = stdin)
- -o filename
-
Single output file (default = stdout)
- -p path
-
Path to files for batch conversion
- -r path
-
Path for results of batch conversion
- -x str
-
File selection suffix for batch conversion (default = .ent)
AUTHOR
The National Center for Biotechnology Information.