ngmx_d1
Displays a trajectory version 4.5.4-dev-20110404-bc5695c
Part of ngmx(1).
Usage
ngmx -f
traj.xtc
-s
topol.tpr
-n
index.ndx
-
[no]
h
-
[no]
version
-nice
int
-b
time
-e
time
-dt
time
Overview
ngmx is the GROMACS trajectory viewer. This program reads a trajectory file, a run input file and an index file and plots a 3D structure of your molecule on your standard X Window screen. No need for a high end graphics workstation, it even works on Monochrome screens.
The following features have been implemented: 3D view, rotation, translation and scaling of your molecule(s), labels on atoms, animation of trajectories, hardcopy in PostScript format, user defined atom-filters runs on MIT-X (real X), open windows and motif, user friendly menus, option to remove periodicity, option to show computational box.
Some of the more common X command line options can be used: -bg, -fg change colors, -font fontname changes the font.
Files
-f traj.xtc Input
Trajectory: xtc trr trj gro g96 pdb cpt
-s topol.tpr Input
Run input file: tpr tpb tpa
-n index.ndx Input, Opt.
Index file
Options
-[no]hno
Print help info and quit
-[no]versionno
Print version info and quit
-nice int 0
Set the nicelevel
-b time 0
First frame (ps) to read from trajectory
-e time 0
Last frame (ps) to read from trajectory
-dt time 0
Only use frame when t MOD dt = first time (ps)
Known problems
- Balls option does not work
- Some times dumps core without a good reason
History
- Debian 7 (Wheezy): the text shown here
- Debian 6.0 (Squeeze)
- Debian 5.0 (Lenny)