carta
molcif2sdf(1)

molcif2sdf1

Convert cifs with multiple molecules (similar to those obtained from the 'cif_molecule' script) to an sdf file with a molecule description. intended to be suitable for upload to pubchem.

Usage

molcif2sdf --options < file1.cif

molcif2sdf --options file1.cif

molcif2sdf --options file1.cif file2*.cif

Overview

Convert CIFs with multiple molecules (similar to those obtained from the 'cif_molecule' script) to an SDF file with a molecule description. Intended to be suitable for upload to PubChem.

Options

-C, --cod-cif 1000000.cif
Provide the original COD CIF to extract structure metadata.

--tmp-dir /tmp
Use the specified temporary directory (default: '/tmp').

--help, --usage
Output a short help message (this message) and exit.

--version
Output version information and exit.

History

  • Debian 13 (Trixie) to Debian 11 (Bullseye): the text shown here
  • Debian 10 (Buster)

Reporting bugs

Report molcif2sdf bugs using e-mail: [email protected]

From cod-tools 3.11.0+dfsg-1 in Debian 13 (Trixie). Parsed by carta from the page's man source.