---
name: "mipe2snps"
section: "1"
platform: "linux"
package: "mipe"
version: "1.1-9"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/mipe2snps"
---

# mipe2snps(1)

Generates list of SNPs from a MIPE file included in output: PCR ID, SNP ID, SNP pos, SNP amb, allele freqs, number of animals genotyped, SNP rank, flanking seqs, SNP remarks based on MIPE version v1.1 arguments: \* mipe\_file \* (optional) list of PCR IDs

## NAME

mipe2snps.pl - Generates list of SNPs from a MIPE file\
   included in output: PCR ID, SNP ID, SNP pos, SNP amb, allele freqs, number of animals genotyped, SNP rank, flanking seqs, SNP remarks\
   based on MIPE version v1.1\
   arguments: \* mipe\_file\
              \* (optional) list of PCR IDs

## SYNOPSIS

mipe2snps.pl your\_file.mipe \<pcr\_id1\> \<pcr\_id2\>

## ADDITIONAL INFO

See http://mipe.sourceforge.net

## AUTHOR

Jan Aerts (jan.aerts@bbsrc.ac.uk)