minimap2.py1
Minimap2 python3 interface
Usage
minimap2.py {[options]
<ref.fa> | <ref.mmi>
<query.fq>}
Options
-
-x STR -
preset: sr, map-pb, map-ont, asm5, asm10 or splice
-
-n INT -
mininum number of minimizers
-
-m INT -
mininum chaining score
-
-k INT -
k-mer length
-
-w INT -
minimizer window length
-
-r INT -
band width
-
-c -
output the cs tag