NAME
minimap2.py - minimap2 Python3 interface
SYNOPSIS
minimap2.py [options] <ref.fa>|<ref.mmi> <query.fq>
OPTIONS
- -x STR
-
preset: sr, map-pb, map-ont, asm5, asm10 or splice
- -n INT
-
mininum number of minimizers
- -m INT
-
mininum chaining score
- -k INT
-
k-mer length
- -w INT
-
minimizer window length
- -r INT
-
band width
- -c
-
output the cs tag
AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and
can be used for any other usage of the program.