NAME
mincpik - MNI medical image format tools
DESCRIPTION
Option h is ambiguous (help, horizontal) Usage:
-
mincpik [options] <infile>.mnc [<image.type>]
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mincpik generates image files from MINC volumes using the Imagemagick convert utility. Use -help or -man for more information and examples
OPTIONS
-v, --verbose
-
Be noisy when doing things
--version
-
Print version number and exit
-?, --help
-
Dump some quick help output
--man
-
Dump a man page
-c --clobber
-
overwrite the output file if it exists already
-f --fake
-
do a dry run, (echo cmds only). This is usually used in combination with -verbose to echo commands only
--scale
-
scaling factor for resulting image, by default images are output at twice their original resolution
--width
-
autoscale the resulting image to have a fixed image width (in pixels)
--depth
-
bitdepth for resulting image 8 or 16 (MSB machines only!)
--title
-
add a title to the resulting image, if just this option is specified the text used for the title is the name of the input image file.
--title_text
-
use the input string for the title [default: input-filename]. This option must be used in conjunction with -title
--title_size
-
font point size for the title
--anot_bar
-
create an annotated bar to match the image (use height of the output image)
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Image range and lookup table options:
--range
-
valid range of values for MINC file
--image_range
-
range of image values to use for pixel intensity
--auto_range
-
automatically determine image range using a 5 and 95% PcT. (histogram)
--lookup
-
arguments to pass to minclookup
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Slicing options:
-s --slice
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slice number to get. (note this is in voxel co-ordinates)
-z --axial --transverse
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get an axial/transverse (z) slice
-y --coronal
-
get a coronal (y) slice
-x --sagittal
-
get a sagital (x) slice
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Triplanar options:
-t --triplanar
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create a triplanar view of the input file
--tilesize
-
pixel size for each image in a triplanar
--sagittal_offset
-
offset the sagittal slice from the centre
--sagittal_offset_perc
-
offset the sagittal slice by a percentage from the centre
--vertical
-
create a vertical triplanar view (Default)
--horizontal
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create a horizontal triplanar view