NAME
mia-meshdistance-to-stackmask - Evaluate the distance between a binary shape given as reference and a mesh.
SYNOPSIS
mia-meshdistance-to-stackmask -i <in-mesh> -r <ref-mask> -o <out-mesh> [options]
DESCRIPTION
mia-meshdistance-to-stackmask This program takes a binary masks and a triangular mesh as input and evaluates the distance of the mesh vertices to the binary maskand stores the result in a new mesh.
OPTIONS
- -i --in-mesh=(input, required); io
-
input mesh
For supported file types see PLUGINS:mesh/io
- -r --ref-mask=(input, required); io
-
reference binary mask
For supported file types see PLUGINS:2dimage/io
- -o --out-mesh=(required, output); io
-
output mesh
For supported file types see PLUGINS:mesh/io
Help & Info
- -V --verbose=warning
-
verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:
trace ‐ Function call trace
debug ‐ Debug output
info ‐ Low level messages
message ‐ Normal messages
warning ‐ Warnings
fail ‐ Report test failures
error ‐ Report errors
fatal ‐ Report only fatal errors
- --copyright
-
print copyright information
- -h --help
-
print this help
- -? --usage
-
print a short help
- --version
-
print the version number and exit
Processing
- --threads=-1
-
Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).
PLUGINS: 2dimage/io
- bmp
-
BMP 2D-image input/output support. The plug-in supports reading and writing of binary images and 8-bit gray scale images. read-only support is provided for 4-bit gray scale images. The color table is ignored and the pixel values are taken as literal gray scale values.
Recognized file extensions: .BMP, .bmp
Supported element types:
binary data, unsigned 8 bit
- datapool
-
Virtual IO to and from the internal data pool
Recognized file extensions: .@
- dicom
-
2D image io for DICOM
Recognized file extensions: .DCM, .dcm
Supported element types:
signed 16 bit, unsigned 16 bit
- exr
-
a 2dimage io plugin for OpenEXR images
Recognized file extensions: .EXR, .exr
Supported element types:
unsigned 32 bit, floating point 32 bit
- jpg
-
a 2dimage io plugin for jpeg gray scale images
Recognized file extensions: .JPEG, .JPG, .jpeg, .jpg
Supported element types:
unsigned 8 bit
- png
-
a 2dimage io plugin for png images
Recognized file extensions: .PNG, .png
Supported element types:
binary data, unsigned 8 bit, unsigned 16 bit
- raw
-
RAW 2D-image output support
Recognized file extensions: .RAW, .raw
Supported element types:
binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit
- tif
-
TIFF 2D-image input/output support
Recognized file extensions: .TIF, .TIFF, .tif, .tiff
Supported element types:
binary data, unsigned 8 bit, unsigned 16 bit, unsigned 32 bit
- vista
-
a 2dimage io plugin for vista images
Recognized file extensions: .-, .V, .VISTA, .v, .vista
Supported element types:
binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit
PLUGINS: mesh/io
- datapool
-
Virtual IO to and from the internal data pool
Recognized file extensions: .@
- off
-
plugin to load/store some Geomview OFF files. Supported is only the ASCII format 3D meshes with normales and per-vertex RGB colors. Alpha values and texture coordinates, as well as per face properties are ignored. Polygons are read and triangulated.
Recognized file extensions: .OFF, .off
- ply
-
Ply triangle mesh input/output support
Recognized file extensions: .PLY, .ply
- stl
-
STL mesh io plugin
Recognized file extensions: .STL, .stl
- vista
-
Vista/Simbio triangle mesh input/output support
Recognized file extensions: .-, .V, .VMESH, .v, .vmesh
- vtk
-
A subset of VTK mesh in-and output: Triangle meshes are written, and triangle meshes and triangle strips are read. Additional per-vertex attributes are supported: 'normals', 'colors' for three component colors, and 'scale' for a scalar value attached to each vertex. The data is written by the vtkPolyDataWriter in binary format.
Recognized file extensions: .VTK, .VTKMESH, .vtk, .vtkmesh
EXAMPLE
Evaluate the distance of the mask given in the images maskXXXX.png to the mesh given in mesh.v and save the result to mesh-dist.v
mia-meshdistance-to-stackmask -i mesh.v -r maskXXXX.png -o mesh-dist.v
AUTHOR(s)
Gert Wollny
COPYRIGHT
This software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the option '--copyright'.