--- name: "mia-3dimagecreator" section: "1" platform: "linux" package: "mia-tools" version: "2.4.7-11+b1" release: "Debian 12 (Bookworm)" platforms: ["linux"] url: "https://new.carta.tech/mia-3dimagecreator" --- # mia-3dimagecreator(1) Create a synthetic 3D image. ## NAME mia-3dimagecreator - Create a synthetic 3D image. ## SYNOPSIS **mia-3dimagecreator -o \ \[options\]** ## DESCRIPTION **mia-3dimagecreator** This program creates a 3D image that contains an object created by one of the object creator plug-ins (creator/3dimage) ## OPTIONS - \-o --out-file=(output, required); io output file for create object\ For supported file types see PLUGINS:3dimage/io - \-s --size=\[128,128,128\] size of the object - \-r --repn=ubyte input pixel type *bit* ‐ binary data *sbyte* ‐ signed 8 bit *ubyte* ‐ unsigned 8 bit *sshort* ‐ signed 16 bit *ushort* ‐ unsigned 16 bit *sint* ‐ signed 32 bit *uint* ‐ unsigned 32 bit *slong* ‐ signed 64 bit *ulong* ‐ unsigned 64 bit *float* ‐ floating point 32 bit *double* ‐ floating point 64 bit *none* ‐ no pixel type defined - \-j --object=sphere object to be created\ For supported plugins see PLUGINS:3dimage/creator ### Help & Info - \-V --verbose=warning verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are: *trace* ‐ Function call trace *debug* ‐ Debug output *info* ‐ Low level messages *message* ‐ Normal messages *warning* ‐ Warnings *fail* ‐ Report test failures *error* ‐ Report errors *fatal* ‐ Report only fatal errors - \--copyright print copyright information - \-h --help print this help - \-? --usage print a short help - \--version print the version number and exit ### Processing - \--threads=-1 Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation). ## PLUGINS: 3dimage/creator - **lattic** 3D lattic creation program, supported parameters are: *fx* = 16; float in \[1, 64\] frequency in x-dir. *fy* = 16; float in \[1, 64\] frequency in y-dir. *fz* = 16; float in \[1, 64\] frequency in z-dir. - **sphere** 3D sphere creation program, supported parameters are: *f* = 2; float in \[0, 10\] spherical change frequency. *p* = 2; float in \[0.1, 100\] spherical shape parameter (2.0 = sphere). ## PLUGINS: 3dimage/io - **analyze** Analyze 7.5 image Recognized file extensions: .HDR, .hdr Supported element types: unsigned 8 bit, signed 16 bit, signed 32 bit, floating point 32 bit, floating point 64 bit - **datapool** Virtual IO to and from the internal data pool Recognized file extensions: .@ - **dicom** Dicom image series as 3D Recognized file extensions: .DCM, .dcm Supported element types: signed 16 bit, unsigned 16 bit - **hdf5** HDF5 3D image IO Recognized file extensions: .H5, .h5 Supported element types: binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, signed 64 bit, unsigned 64 bit, floating point 32 bit, floating point 64 bit - **inria** INRIA image Recognized file extensions: .INR, .inr Supported element types: signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit - **mhd** MetaIO 3D image IO using the VTK implementation (experimental). Recognized file extensions: .MHA, .MHD, .mha, .mhd Supported element types: signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit - **nifti** NIFTI-1 3D image IO. The orientation is transformed in the same way like it is done with 'dicomtonifti --no-reorder' from the vtk-dicom package. Recognized file extensions: .NII, .nii Supported element types: signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, signed 64 bit, unsigned 64 bit, floating point 32 bit, floating point 64 bit - **vff** VFF Sun raster format Recognized file extensions: .VFF, .vff Supported element types: unsigned 8 bit, signed 16 bit - **vista** Vista 3D Recognized file extensions: .-, .V, .VISTA, .v, .vista Supported element types: binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit - **vti** 3D image VTK-XML in- and output (experimental). Recognized file extensions: .VTI, .vti Supported element types: signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit - **vtk** 3D VTK image legacy in- and output (experimental). Recognized file extensions: .VTK, .VTKIMAGE, .vtk, .vtkimage Supported element types: signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit ## EXAMPLE Create an image output.v of size \<64,128,256\> that contains a lattic with frequencys 8, 16, and 4 in x, y and, z-direction respectively. mia-3dimagecreator -o lattic.v -j lattic:fx=8,fy=16,fz=4 -s "\<64,128,256\>" ## AUTHOR(s) Gert Wollny ## COPYRIGHT This software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the option '--copyright'.