---
name: "mia-2dseries2sets"
section: "1"
platform: "linux"
package: "mia-tools"
version: "2.4.7-11+b1"
release: "Debian 12 (Bookworm)"
platforms: ["linux"]
url: "https://new.carta.tech/mia-2dseries2sets"
---

# mia-2dseries2sets(1)

Combine images of a series to sets.

## NAME

mia-2dseries2sets - Combine images of a series to sets.

## SYNOPSIS

**mia-2dseries2sets -o \<out-directory\> \[options\] \<PLUGINS:2dimage/io\>**

## DESCRIPTION

**mia-2dseries2sets** This program takes all image files that are given as free parameters on the command line and creates segmentation sets based on information found in the images. Used information is the z-location of the slice and the acquisition number. The code is taylored to used the according descriptors defined in the DICOM standard. All images with the same slice location will be grouped together in one segmentation set and ordered according to their acquisition number. Slice locations are rounded to three digits accuracy to make proper comparison of floating point values feasible.

## OPTIONS

- \-o --out-directory=(required, output); string

  output directory (needs to exist and be writable)

- \--no-copy

  don't copy image files to output directory

### Help & Info

- \-V --verbose=warning

  verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:

  *trace* ‐ Function call trace

  *debug* ‐ Debug output

  *info* ‐ Low level messages

  *message* ‐ Normal messages

  *warning* ‐ Warnings

  *fail* ‐ Report test failures

  *error* ‐ Report errors

  *fatal* ‐ Report only fatal errors

- \--copyright

  print copyright information

- \-h --help

  print this help

- \-? --usage

  print a short help

- \--version

  print the version number and exit

### Processing

- \--threads=-1

  Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).

## PLUGINS: 2dimage/io

- **bmp**

  BMP 2D-image input/output support. The plug-in supports reading and writing of binary images and 8-bit gray scale images. read-only support is provided for 4-bit gray scale images. The color table is ignored and the pixel values are taken as literal gray scale values.

Recognized file extensions:  .BMP, .bmp

Supported element types:

binary data, unsigned 8 bit

- **datapool**

  Virtual IO to and from the internal data pool

Recognized file extensions:  .@

- **dicom**

  2D image io for DICOM

Recognized file extensions:  .DCM, .dcm

Supported element types:

signed 16 bit, unsigned 16 bit

- **exr**

  a 2dimage io plugin for OpenEXR images

Recognized file extensions:  .EXR, .exr

Supported element types:

unsigned 32 bit, floating point 32 bit

- **jpg**

  a 2dimage io plugin for jpeg gray scale images

Recognized file extensions:  .JPEG, .JPG, .jpeg, .jpg

Supported element types:

unsigned 8 bit

- **png**

  a 2dimage io plugin for png images

Recognized file extensions:  .PNG, .png

Supported element types:

binary data, unsigned 8 bit, unsigned 16 bit

- **raw**

  RAW 2D-image output support

Recognized file extensions:  .RAW, .raw

Supported element types:

binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit

- **tif**

  TIFF 2D-image input/output support

Recognized file extensions:  .TIF, .TIFF, .tif, .tiff

Supported element types:

binary data, unsigned 8 bit, unsigned 16 bit, unsigned 32 bit

- **vista**

  a 2dimage io plugin for vista images

Recognized file extensions:  .-, .V, .VISTA, .v, .vista

Supported element types:

binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit

## EXAMPLE

Create the segmentation sets from a series of DICOM images and copy the files to the output directory (copying is the default).

mia-2dseries2sets -o /home/user/series /net/dicoms/patient1/series1/\*.dcm

## AUTHOR(s)

Gert Wollny

## COPYRIGHT

This software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain. It comes  with  ABSOLUTELY  NO WARRANTY  and  you  may redistribute it under the terms of the GNU  GENERAL PUBLIC LICENSE Version 3 (or later). For more  information run the program with the option '--copyright'.