---
name: "mia-2dsegshiftperslice"
section: "1"
platform: "linux"
package: "mia-tools"
version: "2.4.7-11+b1"
release: "Debian 12 (Bookworm)"
platforms: ["linux"]
url: "https://new.carta.tech/mia-2dsegshiftperslice"
---

# mia-2dsegshiftperslice(1)

Translate a segmentation by the given amount.

## NAME

mia-2dsegshiftperslice - Translate a segmentation by the given amount.

## SYNOPSIS

**mia-2dsegshiftperslice -i \<in-file\> -o \<out-file\> -S \<shift\> \[options\]**

## DESCRIPTION

**mia-2dsegshiftperslice** This program move the segmentation(s) of an image series by using a shift that is given on a per-slice base. The program can be used to correct the segmentation of the images if a linear registration was executed that only applies a translation and does not correct the segmentation automatically.

## OPTIONS

- \-i --in-file=(required, input); string

  input segmentation set

- \-o --out-file=(required, output); string

  output segmentation set

- \-g --image-file=crop

  output image filename base

- \-S --shift=(required); string

  shift of segmentation - base name

### Help & Info

- \-V --verbose=warning

  verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:

  *trace* ‐ Function call trace

  *debug* ‐ Debug output

  *info* ‐ Low level messages

  *message* ‐ Normal messages

  *warning* ‐ Warnings

  *fail* ‐ Report test failures

  *error* ‐ Report errors

  *fatal* ‐ Report only fatal errors

- \--copyright

  print copyright information

- \-h --help

  print this help

- \-? --usage

  print a short help

- \--version

  print the version number and exit

### Processing

- \--threads=-1

  Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).

## EXAMPLE

Shirt the segmentation given in set segment.set by files shiftXXXX.txt and store the result in shifted.set. Note, the numbering of the shiftXXXX.txx files must coincide.

mia-2dsegshiftperslice -i segment.set -o shifted.set -g shifted -S shift

## AUTHOR(s)

Gert Wollny

## COPYRIGHT

This software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain. It comes  with  ABSOLUTELY  NO WARRANTY  and  you  may redistribute it under the terms of the GNU  GENERAL PUBLIC LICENSE Version 3 (or later). For more  information run the program with the option '--copyright'.