NAME
megahit_core - ultra-fast and memory-efficient meta-genome assembler
SYNOPSIS
megahit_core <sub_program> [sub options]
DESCRIPTION
-
sub-programs:
- assemble
-
assemble from SdBG
- local
-
local asssembly
- iterate
-
extract iterative edges
- buildlib
-
build read library
- count
-
kmer counting
- read2sdbg
-
build sdbg from reads
- seq2sdbg
-
build sdbg from megahit contigs + edges
- contig2fastg
-
convert MEGAHIT's k*.contigs.fa to fastg format
- readstat
-
calculate read stats (# of reads, bases, longest, shortest, average)
- filterbylen
-
filter contigs by length
- checkcpu
-
check whether the run-time CPU supports POPCNT and BMI2
- checkpopcnt
-
check whether the run-time CPU supports POPCNT
- checkbmi2
-
check whether the run-time CPU supports BMI2
- dumpversion
-
dump version
- kmax
-
the largest k value supported
AUTHOR
This manpage was written by Shayan Doust for the Debian distribution and can be used for any other usage of the program.