NAME
tree-mean-lengths - Compute the mean lengths for branches in the given topology.
SYNOPSIS
tree-mean-lengths tree-file < in-file
DESCRIPTION
Compute the mean lengths for branches in the given topology.
ALLOWED OPTIONS:
- -h, –help
-
produce help message
- –tree arg
-
tree to re-root
- -s arg (=0), –skip arg (=0)
-
number of tree samples to skip
- -u arg, –until arg
-
Read until this number of trees.
- –prune arg
-
Comma-separated taxa to remove
- -x arg (=1), –subsample arg (=1)
-
factor by which to subsample
- –var
-
report standard deviation of branch lengths instead of mean
- –no-node-lengths
-
ignore branches not in the specified topology
- –safe
-
Don’t die if no trees match the topology
- –drop-partial
-
Remove partial branches
- –seed arg
-
random seed
- -V, –verbose
-
Output more log messages on stderr.
REPORTING BUGS:
BAli-Phy online help: ⟨http://www.bali-phy.org/docs.php⟩\c .
Please send bug reports to ⟨[email protected]⟩\c .
AUTHORS
Benjamin Redelings.