---
name: "mclindex"
section: "7"
platform: "linux"
package: "mcl-doc"
version: "1:22-282+ds-4"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/mclindex"
---

# mclindex(7)

mclindex - a list of the utilities and modules present in the MCL distribution.

For more information, consult **[mclfamily(7)](/mclfamily/7.md)**.

**[mcl(1)](/mcl/1.md)**\
 the mcl manual page\
 **[mclfaq(7)](/mclfaq/7.md)**\
 the mcl FAQ\
 **[mcxio(5)](/mcxio/5.md)**\
 the mcl matrix format specification\
 **[mcx(1)](/mcx/1.md)**\
 interface to basic matrix operations\
 **[mcxdump(1)](/mcxdump/1.md)**\
 dump matrices, optionally map indices to labels\
 **[mcxarray(1)](/mcxarray/1.md)**\
 transform array data to MCL matrices\
 **[mcxconvert(1)](/mcxconvert/1.md)**\
 convert between ascii/binary storage types

**[clmdist(1)](/clmdist/1.md)**\
 compute distances between clusterings\
 **[clminfo(1)](/clminfo/1.md)**\
 performance measures for clusterings\
 **[clmmeet(1)](/clmmeet/1.md)**\
 compute intersection of clusterings\
 **[clmmate(1)](/clmmate/1.md)**\
 compute best matches between two clusterings\
 **[clmimac(1)](/clmimac/1.md)**\
 Interpret Matrices (c.q. MCL iterands) As Clusterings\
 **[clmresidue(1)](/clmresidue/1.md)**\
 extend subgraph clusterings onto encompassing graph\
 **[clmorder(1)](/clmorder/1.md)**\
 reorder indices to represent blocks from different clusterings\
 **[clmclose(1)](/clmclose/1.md)**\
 fetch connected components from graphs or subgraphs

**[mcxio(5)](/mcxio/5.md)**\
 the mcl matrix format specification\
 **[mcx(1)](/mcx/1.md)**\
 interface to basic matrix operations\
 **[mcxsubs(1)](/mcxsubs/1.md)**\
 extract submatrices by specifying sets of nodes and clusters\
 **[mcxmap(1)](/mcxmap/1.md)**\
 remap matrix indices / relabel graph nodes