NAME
maskAlignedReads - Mask aligned reads in regions file
DESCRIPTION
usage: maskAlignedReads [-h] [-v] [-l LOGFILE] [-d] [-i]
-
inCmpFile inRgnFofn outRgnFofn
Use in.cmp.h5 to mask corresponding regions of files in in.rgn.h5, write output to a new rgn.fofn.
positional arguments:
- inCmpFile
-
An input cmp.h5 file.
- inRgnFofn
-
A fofn of input region table files.
- outRgnFofn
-
A fofn of output region table files.
optional arguments:
- -h, --help
-
show this help message and exit
- -v, --version
-
show program's version number and exit
- -l LOGFILE, --logFile LOGFILE
-
Specify a file to log to. Defaults to stderr. (default: None)
- -d, --debug
-
Increases verbosity of logging (default: False)
- -i, --info
-
Display informative log entries (default: False)
AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.