NAME
maq.pl - helper script for maq
SYNOPSIS
maq.pl <command> [options] <input> [...]
DESCRIPTION
helper script for maq
Version: 0.4.7
OPTIONS.
- easyrun
-
simple pipeline for small dataset
- demo
-
demonstration of maq functionalities (for SE only)
- SNPfilter
-
filter SNPs
- statmap
-
extract statistics from the error output of 'maq map'
- chrpt2snp
-
convert dbSNP's chr_rpt file to .snp file
- ucsc2snp
-
convert UCSC's SNP dump to .snp file
- fastq2bfq
-
convert fastq in batch
- cat2pair
-
convert paired end reads format
- sv
-
call structural variations
- indelpe
-
post-processing indelpe output
AUTHOR
The program was written by Heng Li <[email protected]>.
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.