NAME
mapping_to_phandango - create a plot file for visualisation in phandango
SYNOPSIS
mapping_to_phandango -s <sam_file> -k <seer_kmers> > phandango.plot
DESCRIPTION
Creates a plot file for visualisation in phandango
OPTIONS
Required
- -s, --sam
-
Sam file of kmers mapped to reference (unsorted)
- -k, --kmers
-
Kmers that were mapped
Optional
- -m, --map
-
Minimum mapping quality
- -h, --help
-
Displays this message
AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.